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The Discovery and Evolution of Enzymes

Enzymology's history began with Anselme Payen's isolation of diastase in 1833, leading to the study of enzymes as biological catalysts. Louis Pasteur's vitalist theory on fermentation and Eduard Buchner's cell-free fermentation discovery further shaped the field. The term 'enzyme' was introduced by Wilhelm Kühne, and the protein nature of enzymes was confirmed by crystallization studies. Structural biology and enzyme classification have since provided deeper understanding of enzyme diversity and evolution.

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1

Emergence of Enzymology as a scientific field

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19th century, built on digestion and starch transformation studies.

2

Significance of diastase discovery

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Revealed biological catalysts, led to enzyme structure and function exploration.

3

The scientist ______ suggested that ______ was a result of 'ferments' in yeast, which he believed were tied to the yeast's ______.

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Louis Pasteur fermentation life force

4

Initially, ______ held a ______ perspective, thinking enzymatic activities were a sign of life, but this was later replaced by the knowledge that enzymes are ______ that function outside living cells.

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Louis Pasteur vitalist chemical entities

5

Original meaning of 'enzyme'

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Derived from 'in yeast', indicating biocatalysts' role in facilitating chemical reactions.

6

Enzymes vs. Ferments distinction

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Enzymes are biochemical entities that function outside living cells, unlike 'ferments' linked to metabolism within organisms.

7

Buchner's discovery of the enzyme ______ as the catalyst for sugar fermentation was a significant challenge to the vitalist theory.

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zymase

8

For his work on enzymes, Buchner was awarded the ______ in ______ for Chemistry.

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Nobel Prize 1907

9

The award of the Nobel Prize to Buchner in 1907 confirmed that enzymes are ______ substances, capable of functioning outside living cells.

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chemical

10

Enzyme naming convention

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Enzymes named by adding '-ase' to substrate name or reaction type.

11

Debate over enzyme composition

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Early 20th century debate: enzymes as proteins or proteins as catalytic entity carriers.

12

Nobel Prize in Chemistry 1946

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Awarded to Northrop and Stanley for crystallizing enzymes, supporting enzymes as proteins.

13

The field of ______ biology emerged following the initial crystallization of enzymes.

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structural

14

Enzymes are categorized by the reactions they facilitate, using a naming system from the ______.

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International Union of Biochemistry and Molecular Biology

15

The nomenclature system for enzymes uses ______ numbers to reflect their biochemical activities.

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EC

16

Enzyme classification by sequence similarity vs. function

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Enzymes may not have similar sequences despite catalyzing the same reaction, indicating classification by sequence doesn't always match function.

17

Enzyme grouping into families

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Enzymes are grouped based on structural or evolutionary relationships, not just by the reactions they catalyze.

18

Role of horizontal gene transfer in enzyme evolution

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Horizontal gene transfer contributes to the distribution of enzymatic functions across different organisms, affecting enzyme evolution.

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The Discovery of Diastase and the Birth of Enzymology

Enzymology, the study of enzymes, emerged as a distinct scientific field in the 19th century, building on earlier observations of digestion and starch transformation. The pivotal moment came in 1833 when Anselme Payen, a French chemist, isolated the first enzyme, diastase, from malt extracts. This discovery not only revealed the existence of biological catalysts but also set the stage for the exploration of enzyme structure and function, which would become fundamental to biochemistry.
Vintage laboratory with glass instruments for enzymological research, brass microscope, lab coat and illuminated window.

Louis Pasteur's Vitalist Theory of Fermentation

Louis Pasteur, a prominent figure in microbiology, made significant contributions to enzymology through his studies on the fermentation process. Pasteur proposed that fermentation was a biological process, driven by "ferments" within yeast cells, which he thought were intrinsically linked to the cells' life force. This vitalist view, which held that enzymatic reactions were a manifestation of life, was influential but would later be supplanted by the understanding that enzymes are chemical entities that can act independently of living cells.

The Introduction of the Term "Enzyme"

The term "enzyme," meaning "in yeast," was coined by Wilhelm Kühne in 1877 to describe biocatalysts capable of facilitating chemical reactions outside of living cells. This was a departure from the term "ferment," which was traditionally associated with the metabolic activities of living organisms. The distinction between enzymes and ferments was a critical development, allowing for the recognition of enzymes as biochemical entities and paving the way for the field of enzymology to evolve.

Eduard Buchner's Discovery of Cell-Free Fermentation

Eduard Buchner's groundbreaking experiments in 1897 provided definitive evidence that fermentation could occur in cell-free yeast extracts, a finding that challenged the vitalist theory. He identified the enzyme zymase as the catalyst for sugar fermentation. For this discovery, Buchner received the Nobel Prize in Chemistry in 1907, affirming that enzymes could function outside of living cells and thus were chemical, not biological, in nature.

Enzyme Nomenclature and the Protein Nature of Enzymes

Enzymes are typically named by adding the suffix "-ase" to the name of the substrate they act on or the type of reaction they catalyze. The early 20th century saw a debate over whether enzymes were proteins or if proteins merely served as carriers for the catalytic entities. This debate was resolved when James B. Sumner demonstrated that the enzyme urease was a pure protein, a discovery that was further supported by the crystallization of enzymes by John Howard Northrop and Wendell Meredith Stanley, who shared the Nobel Prize in Chemistry in 1946 for their work.

Structural Biology and Enzyme Classification

The advent of enzyme crystallization led to the development of structural biology, with the first high-resolution enzyme structure, that of lysozyme, being determined in 1965. This breakthrough provided a molecular view of enzyme action. Enzymes are systematically classified based on the reactions they catalyze, using a nomenclature system developed by the International Union of Biochemistry and Molecular Biology. This system, which assigns enzymes EC numbers, organizes them into a hierarchical structure that reflects their specific biochemical activities.

Enzyme Diversity and Evolutionary Insights

Enzymes exhibit remarkable diversity, and their classification by sequence similarity does not always correspond to their function. Enzymes that catalyze the same reaction may have vastly different sequences and are often grouped into families based on structural or evolutionary relationships. The existence of non-homologous isofunctional enzymes—enzymes that perform the same function but have unrelated sequences—highlights the convergent evolution of enzymatic activities. This phenomenon has important implications for our understanding of enzyme evolution and the distribution of enzymatic functions across different organisms, including the role of horizontal gene transfer.